Selected Publications

Maher KA, Bajic M, Kajala K, Reynoso M, Pauluzzi G, West DA, Zumstein K, Woodhouse M, Bubb K, Dorrity M, Queitsch C, Bailey-Serres, Sinha N, Brady SM, Deal RB. (2017) Profiling of accessible chromatin regions across multiple plant species and cell types reveals common gene regulatory principles and new control modules. Plant Cell.  [PubMed]
Reynoso MA, Pauluzzi GC, Kajala K, Cabanlit C, Velasco J, Bzin J, Deal R, Sinha NR, Brady SM, Bailey-Serres J. (2017) Nuclear transcriptomes at high resolution using retooled INTACT.   Plant Physiology.  [PubMed]
Turco GM, Kajala K, Kunde-Ramamoorthy G, Ngan CY, Olson A, Desphande S, Tolkunove D, Waring B, Stelpflug S, Klein P, Schmutz J, Kaeppler S, Ware D, Wei CL, Etchells JP, Brady SM. (2017) DNA methylation and gene expression regulation associated with vascularization in Sorghum bicolor. New Phytologist. [PubMed]

 De Lucas M, Pu L, Turco G, Gaudinier A, Morao AK, Harashima H, Kim D, Ron M, Sugimoto K, Roudier F, Brady SM. (2016) Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation. Plant Cell. [PubMed]

Sparks EE, Drapek C, Gaudinier A, Li S, Ansariola M, Shen N, Hennacy JH, Zhang J, Turco G, Petricka JJ, Foret J, Hartemink AJ, Gordân R, Megraw M, Brady SM, Benfey PN. (2016) Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors. Developmental Cell. [PubMed]

Taylor-Teeples M, Lin L, de Lucas M, Turco G, Toal TW, Gaudinier A, Young NF, Trabucco GM, Veling MT, Lamothe R, Handakumbura PP, Xiong G, Corwin J, Tsoukalas N, Pauly M, Kliebenstein DJ, Tagkopulos I, Breton G, Pruneda-Paz JL, Ahnert SE, Kay SA, Hazen SP, Brady SM. (2015) Environmental, Developmental and Genotype-Dependent Regulation of Xylem Cell Specification and Secondary Cell Wall Biosynthesis in Arabidopsis thaliana. Nature. [PubMed]

Ron M, Kajala K, Pauluzzi G, Wang D, Reynoso MA, Zumstein K, Garcha J, Winte S, Masson H, Inagaki S, Federici F, Sinha N, Deal RB, Bailey-Serres J, Brady SM. (2014) Hairy root transformation using Agrobacterium rhizogenes as a tool for exploring cell type-specific gene expression and function using tomato as a model. Plant Physiology. [PubMed]

Li B, Gaudinier A, Tang M, Taylor-Teeples M, Nham NT, Ghaffari C, Benson DS, Steinmann M, Gray JA, Brady SM, Kliebenstein DJ. (2014) Promoter-Based Integration in Plant Defense Regulation. Plant Physiology.  [PubMed]

Ron M, Dorrity M, de Lucas M, Toal T, Hernandez RI, Little SA, Maloof JN, Kliebenstein DJ, Brady SM.  (2013) Identification of Novel Loci Regulating Inter-specific Variation in Root Morphology and Cellular Development in Tomato.  Plant Physiology.  [PubMed]

Moussaief A, Rogachev I, Brodsky L, Malitsky S, Toal TW, Belcher H, Yativ M, Brady SM, Benfey PN, Aharoni A.  (2013)  High-resolution metabolic mapping of cell types in plant roots.  PNAS.  [PubMed]

Gaudinier A, Zhang L, Reece-Hoyes JS, Taylor-Teeples M, Pu L, Liu Z, Breton G, Pruneda- Paz JL, Kim D, Kay SA, Walhout AJM, Ware D, Brady SM. (2011)  Enhanced Y1H assays to elucidate Arabidopsis gene regulatory networks. Nature Methods. [PubMed]

Brady SM, Orlando DA, Lee JY, Wang, JY, Koch D, Dinneny JR, Mace D, Ohler U, Benfey PN.  (2007) Dominant Root Expression Patterns Revealed in a High-Resolution Spatiotemporal
Expression Map.  Science.  [PubMed]